If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ), 'gf_id' => 'HOM05D000780', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000780' ), 'data_identifier' => 'HOM05D000780', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000780', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '758', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09250' => 'bna', 'A01p30930' => 'bna', 'A01p30980' => 'bna', 'A03p43560' => 'bna', 'A03p58350' => 'bna', 'A04p10530' => 'bna', 'A05p16550' => 'bna', 'A07p08050' => 'bna', 'A07p33060' => 'bna', 'A09p00310' => 'bna', 'Aa31LG2G2020' => 'aar', 'Aa31LG2G21690' => 'aar', 'Aa31LG8G10960' => 'aar', 'Aa31LG8G10970' => 'aar', 'Aa31LG8G10980' => 'aar', 'Aa31LG9G18020' => 'aar', 'Aa31LG9G4160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1967' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3966' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3981' => 'aag', 'Actinidia06829' => 'ach', 'Actinidia06831' => 'ach', 'Actinidia22861' => 'ach', 'Actinidia25160' => 'ach', 'Actinidia32967' => 'ach', 'Actinidia34762' => 'ach', 'Actinidia37387' => 'ach', 'Ah.01g011970' => 'amhyb', 'Ah.02g118490' => 'amhyb', 'Ah.04g153510' => 'amhyb', 'Ah.06g187920' => 'amhyb', 'Ah.06g187930' => 'amhyb', 'Ah.06g187940' => 'amhyb', 'Ah.15g091610' => 'amhyb', 'Ah.15g091630' => 'amhyb', 'AL2G19150' => 'aly', 'AL3G39710' => 'aly', 'AL3G39720' => 'aly', 'AL5G12290' => 'aly', 'AL7G17060' => 'aly', 'AL7G23830' => 'aly', 'AL7G43060' => 'aly', 'AL7G43540' => 'aly', 'AL7G45990' => 'aly', 'AL7G51540' => 'aly', 'AL9U10010' => 'aly', 'Aqoxy4G02599' => 'aox', 'Aqoxy5G00096' => 'aox', 'Aqoxy5G00101' => 'aox', 'Aqoxy5G00106' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09X96J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22BZB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1PM7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0EAR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E93Z3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GF42G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5JI0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAXM00' => 'arhy', 'AT1G64780' => 'ath', 'AT3G24290' => 'ath', 'AT3G24300' => 'ath', 'AT4G13510' => 'ath', 'AT4G28700' => 'ath', 'AT5G37360' => 'ath', 'AT5G38890' => 'ath', 'ATR0088G058' => 'atr', 'ATR0618G268' => 'atr', 'ATR0723G013' => 'atr', 'ATR0723G079' => 'atr', 'ATR0724G057' => 'atr', 'Atru.chr2.1114' => 'acertr', 'Atru.chr2.1115' => 'acertr', 'Atru.chr2.1116' => 'acertr', 'Atru.chr2.1117' => 'acertr', 'Atru.chr2.1118' => 'acertr', 'Atru.chr3.4229' => 'acertr', 'Atru.chr4.1875' => 'acertr', 'AUR62000634' => 'cqu', 'AUR62000635' => 'cqu', 'AUR62000636' => 'cqu', 'AUR62001658' => 'cqu', 'AUR62006987' => 'cqu', 'AUR62006988' => 'cqu', 'AUR62006989' => 'cqu', 'AUR62006990' => 'cqu', 'AUR62008822' => 'cqu', 'AUR62020119' => 'cqu', 'AUR62025419' => 'cqu', 'AUR62035356' => 'cqu', 'AUR62035890' => 'cqu', 'BcaB01g01289' => 'bca', 'BcaB01g02290' => 'bca', 'BcaB01g02291' => 'bca', 'BcaB03g14595' => 'bca', 'BcaB03g15301' => 'bca', 'BcaB03g16101' => 'bca', 'BcaB04g17683' => 'bca', 'BcaB04g20392' => 'bca', 'BcaB06g26610' => 'bca', 'BcaB07g33050' => 'bca', 'BcaC01g03333' => 'bca', 'BcaC02g09559' => 'bca', 'BcaC04g24105' => 'bca', 'BcaC06g32608' => 'bca', 'BcaC06g35678' => 'bca', 'BcaC07g37353' => 'bca', 'BcaC08g44303' => 'bca', 'BcaC08g46086' => 'bca', 'BcaNung01376' => 'bca', 'BcaNung04700' => 'bca', 'BcaNung06059' => 'bca', 'BolC1t01045H' => 'bol', 'BolC1t03887H' => 'bol', 'BolC3t17619H' => 'bol', 'BolC4t25992H' => 'bol', 'BolC6t36925H' => 'bol', 'BolC6t39025H' => 'bol', 'BolC7t41679H' => 'bol', 'BolC7t46116H' => 'bol', 'BolC8t47650H' => 'bol', 'BraA01t00868Z' => 'bra', 'BraA01t03221Z' => 'bra', 'BraA03t13494Z' => 'bra', 'BraA03t14897Z' => 'bra', 'BraA04t16719Z' => 'bra', 'BraA05t20560Z' => 'bra', 'BraA07t28591Z' => 'bra', 'BraA07t30934Z' => 'bra', 'BraA09t35758Z' => 'bra', 'C01p10830' => 'bna', 'C01p39390' => 'bna', 'C03p53590' => 'bna', 'C04p44170' => 'bna', 'C06p17280' => 'bna', 'C06p39320' => 'bna', 'C07p12110' => 'bna', 'C07p56370' => 'bna', 'C07p60390' => 'bna', 'C08p08020' => 'bna', 'C09p00960' => 'bna', 'CAN.G1311.4' => 'can', 'CAN.G153.16' => 'can', 'CAN.G4.37' => 'can', 'CAN.G4.38' => 'can', 'CAN.G4.39' => 'can', 'CANSAT54G0520' => 'cansat', 'CANSAT54G0921' => 'cansat', 'CANSAT54G0962' => 'cansat', 'CANSAT54G1591' => 'cansat', 'CANSAT78G1817' => 'cansat', 'CARHR056130' => 'chi', 'CARHR100380' => 'chi', 'CARHR215730' => 'chi', 'CARHR219140' => 'chi', 'CARHR236470' => 'chi', 'CARHR263660' => 'chi', 'Carub.0002s0969' => 'cru', 'Carub.0003s2462' => 'cru', 'Carub.0003s2463' => 'cru', 'Carub.0007s2903' => 'cru', 'Carub.0007s3248' => 'cru', 'Carub.0007s3696' => 'cru', 'Ca_08755_v3' => 'car', 'Ca_09984_v3' => 'car', 'Ca_09986_v3' => 'car', 'Ca_11891_v3' => 'car', 'Ca_14927_v3' => 'car', 'CBR_g10970' => 'cbr', 'CBR_g11120' => 'cbr', 'CBR_g19209' => 'cbr', 'CBR_g19210' => 'cbr', 'CBR_g23898' => 'cbr', 'CBR_g30154' => 'cbr', 'CBR_g36398' => 'cbr', 'CBR_g37101' => 'cbr', 'CBR_g37111' => 'cbr', 'CBR_g37113' => 'cbr', 'CBR_g37114' => 'cbr', 'CBR_g37115' => 'cbr', 'CBR_g40726' => 'cbr', 'CBR_g4443' => 'cbr', 'CBR_g52251' => 'cbr', 'CBR_g54162' => 'cbr', 'CBR_g74721' => 'cbr', 'Cc01_g14140' => 'ccan', 'Cc01_g17670' => 'ccan', 'Cc03_g06810' => 'ccan', 'Cc09_g03020' => 'ccan', 'Cc09_g03030' => 'ccan', 'Cc09_g03040' => 'ccan', 'Cc09_g03050' => 'ccan', 'CDE02G0656' => 'cde', 'CDE02G1068' => 'cde', 'CDE02G1952' => 'cde', 'CDE05G1575' => 'cde', 'CDE07G0101' => 'cde', 'CDE08G0512' => 'cde', 'CDE08G0869' => 'cde', 'CDE09G0735' => 'cde', 'CDE11G1081' => 'cde', 'Cfa002497' => 'cfa', 'Cfa006316' => 'cfa', 'Cfa006318' => 'cfa', 'Cfa006838' => 'cfa', 'Cfa008263' => 'cfa', 'Cfa010882' => 'cfa', 'Cfa011690' => 'cfa', 'Cfa014813' => 'cfa', 'Cfa025943' => 'cfa', 'Ciclev10004812m.g' => 'ccl', 'Ciclev10019808m.g' => 'ccl', 'Ciclev10021307m.g' => 'ccl', 'Ciclev10022342m.g' => 'ccl', 'Ciclev10023800m.g' => 'ccl', 'CiPaw.01G175500' => 'cil', 'CiPaw.03G272300' => 'cil', 'CiPaw.07G074400' => 'cil', 'CiPaw.07G077300' => 'cil', 'CiPaw.13G078300' => 'cil', 'CiPaw.13G078400' => 'cil', 'ClCG00G001590' => 'cla', 'ClCG00G005840' => 'cla', 'ClCG03G011490' => 'cla', 'ClCG03G011510' => 'cla', 'ClCG07G001470' => 'cla', 'ClCG11G010290' => 'cla', 'COL.COLO4_06488' => 'col', 'COL.COLO4_15538' => 'col', 'COL.COLO4_15539' => 'col', 'COL.COLO4_15999' => 'col', 'COL.COLO4_19147' => 'col', 'Cpa.g.c33516' => 'cpa', 'Cpa.g.c42374' => 'cpa', 'Cpa.g.sc59.35' => 'cpa', 'Cpa.g.sc756.4' => 'cpa', 'Cpa.g.sc87.55' => 'cpa', 'Cre02.g111050' => 'cre', 'Cre03.g159254' => 'cre', 'Cre06.g293051' => 'cre', 'Cre07.g312750' => 'cre', 'Cre07.g355650' => 'cre', 'Cre09.g400750' => 'cre', 'Cre12.g531000' => 'cre', 'Cre13.g569850' => 'cre', 'Cre14.g629920' => 'cre', 'CsaV3_1G045040' => 'csa', 'CsaV3_2G010040' => 'csa', 'CsaV3_2G010060' => 'csa', 'CsaV3_2G012160' => 'csa', 'CsaV3_3G011530' => 'csa', 'CsaV3_3G028490' => 'csa', 'CsaV3_3G029860' => 'csa', 'CSS0002217' => 'camsi', 'CSS0005756' => 'camsi', 'CSS0011839' => 'camsi', 'CSS0012236' => 'camsi', 'CSS0012715' => 'camsi', 'CSS0022328' => 'camsi', 'CSS0024577' => 'camsi', 'CSS0030613' => 'camsi', 'CSS0041045' => 'camsi', 'CSS0043062' => 'camsi', 'CSS0045157' => 'camsi', 'DCAR_002293' => 'dca', 'DCAR_005521' => 'dca', 'DCAR_030772' => 'dca', 'DCAR_030971' => 'dca', 'Dinv01155' => 'din', 'Dinv06000' => 'din', 'Dinv06003' => 'din', 'Dinv11772' => 'din', 'Dinv14447' => 'din', 'Dinv14448' => 'din', 'Dinv16056' => 'din', 'Dinv18279' => 'din', 'Dinv18706' => 'din', 'Dinv29786' => 'din', 'Dinv43052' => 'din', 'Duzib133G0991' => 'dzi', 'Duzib150G1027' => 'dzi', 'Duzib151G0246' => 'dzi', 'Duzib177G0863' => 'dzi', 'Duzib212G0871' => 'dzi', 'ECA232G1576' => 'eca', 'ECA232G3215' => 'eca', 'ECA232G3479' => 'eca', 'ECA232G3805' => 'eca', 'ECA238G0721' => 'eca', 'ECA238G1176' => 'eca', 'EL10Ac3g06718' => 'bvu', 'EL10Ac4g09765' => 'bvu', 'EL10Ac4g09769' => 'bvu', 'EL10Ac4g09771' => 'bvu', 'EL10Ac4g09772' => 'bvu', 'EL10Ac7g16153' => 'bvu', 'EL10Ac7g17717' => 'bvu', 'Eucgr.B02158' => 'egr', 'Eucgr.B02160' => 'egr', 'Eucgr.H02886' => 'egr', 'Eucgr.H04100' => 'egr', 'Eucgr.H04102' => 'egr', 'Eucgr.H04208' => 'egr', 'Eucgr.H04210' => 'egr', 'Eucgr.J01919' => 'egr', 'Eucgr.K01403' => 'egr', 'Eucgr.L03045' => 'egr', 'FAN02G1432' => 'fan', 'FAN05G0905' => 'fan', 'FAN05G5022' => 'fan', 'FAN09G0636' => 'fan', 'FAN11G0130' => 'fan', 'FAN12G3338' => 'fan', 'FAN14G1321' => 'fan', 'FAN14G2949' => 'fan', 'FAN14G3114' => 'fan', 'FAN14G3675' => 'fan', 'FAN14G3828' => 'fan', 'FAN14G3991' => 'fan', 'FAN14G4937' => 'fan', 'FAN14G5189' => 'fan', 'FAN15G1607' => 'fan', 'FAN16G0199' => 'fan', 'FAN16G0825' => 'fan', 'FAN17G0569' => 'fan', 'FAN18G1636' => 'fan', 'FAN21G2408' => 'fan', 'FAN22G1265' => 'fan', 'FAN24G0167' => 'fan', 'FAN25G1658' => 'fan', 'FAN27G0097' => 'fan', 'FAN27G0443' => 'fan', 'FAN27G2762' => 'fan', 'FvH4_2g20250' => 'fve', 'FvH4_3g18300' => 'fve', 'FvH4_3g38461' => 'fve', 'FvH4_4g05160' => 'fve', 'FvH4_6g01450' => 'fve', 'FvH4_6g01460' => 'fve', 'FvH4_6g01461' => 'fve', 'FvH4_6g01510' => 'fve', 'Glyma.10G132300' => 'gma', 'Glyma.10G167500' => 'gma', 'Glyma.10G167600' => 'gma', 'Glyma.10G167800' => 'gma', 'Glyma.10G168100' => 'gma', 'Glyma.10G168200' => 'gma', 'Glyma.20G082450' => 'gma', 'Glyma.20G221401' => 'gma', 'Glyma.20G221500' => 'gma', 'Glyma.20G221600' => 'gma', 'Gohir.A02G044000' => 'ghi', 'Gohir.A07G072500' => 'ghi', 'Gohir.A10G106450' => 'ghi', 'Gohir.A10G106700' => 'ghi', 'Gohir.A11G134400' => 'ghi', 'Gohir.A11G244300' => 'ghi', 'Gohir.A13G161800' => 'ghi', 'Gohir.A13G161900' => 'ghi', 'Gohir.D02G050000' => 'ghi', 'Gohir.D07G077000' => 'ghi', 'Gohir.D10G160800' => 'ghi', 'Gohir.D10G160900' => 'ghi', 'Gohir.D11G140500' => 'ghi', 'Gohir.D11G254500' => 'ghi', 'Gohir.D13G172100' => 'ghi', 'Gohir.D13G172200' => 'ghi', 'Gorai.001G081600' => 'gra', 'Gorai.005G055200' => 'gra', 'Gorai.007G150700' => 'gra', 'Gorai.007G273100' => 'gra', 'Gorai.011G180700' => 'gra', 'Gorai.011G180800' => 'gra', 'Gorai.013G188500' => 'gra', 'Gorai.013G188600' => 'gra', 'GSVIVG01001853001' => 'vvi', 'GSVIVG01024748001' => 'vvi', 'GSVIVG01026324001' => 'vvi', 'GSVIVG01026325001' => 'vvi', 'HanXRQChr02g0059231' => 'han', 'HanXRQChr05g0140001' => 'han', 'HanXRQChr05g0145151' => 'han', 'HanXRQChr08g0229471' => 'han', 'HanXRQChr11g0327271' => 'han', 'HanXRQChr15g0491391' => 'han', 'HanXRQChr16g0520731' => 'han', 'HanXRQChr16g0520781' => 'han', 'HanXRQChr17g0561931' => 'han', 'HanXRQChr17g0561951' => 'han', 'Haze_04451' => 'cav', 'Haze_04472' => 'cav', 'Haze_04473' => 'cav', 'Haze_11493' => 'cav', 'Haze_24306' => 'cav', 'Haze_24723' => 'cav', 'Hma1.2p1_0123F.1_g058210' => 'hma', 'Hma1.2p1_0130F.1_g060500' => 'hma', 'Hma1.2p1_0130F.1_g060510' => 'hma', 'Hma1.2p1_0146F.1_g065790' => 'hma', 'Hma1.2p1_2051F.1_g312590' => 'hma', 'HPP92_007289' => 'vpl', 'HPP92_007290' => 'vpl', 'HPP92_009057' => 'vpl', 'HPP92_012831' => 'vpl', 'HPP92_022475' => 'vpl', 'Hund07171' => 'sun', 'Hund07173' => 'sun', 'Hund21757' => 'sun', 'Lalb_Chr03g0036901' => 'lal', 'Lalb_Chr05g0215581' => 'lal', 'Lalb_Chr06g0168371' => 'lal', 'Lalb_Chr20g0113501' => 'lal', 'Lalb_Chr21g0311301' => 'lal', 'Lalb_Chr21g0314161' => 'lal', 'Lalb_Chr25g0289761' => 'lal', 'Lj1g0021548' => 'lja', 'Lj1P138T67' => 'lonja', 'Lj2A46G68' => 'lonja', 'Lj2A46T71' => 'lonja', 'Lj2C46T12' => 'lonja', 'Lj3P637T16' => 'lonja', 'Lj5g0015862' => 'lja', 'Lj5g0019051' => 'lja', 'Lj5g0021253' => 'lja', 'Lj6A638T58' => 'lonja', 'Lj6A639T40' => 'lonja', 'Lj6g0001958' => 'lja', 'Lsat_1_v5_gn_2_15441' => 'lsa', 'Lsat_1_v5_gn_2_15461' => 'lsa', 'Lsat_1_v5_gn_6_66781' => 'lsa', 'Lsat_1_v5_gn_9_19241' => 'lsa', 'Lsat_1_v5_gn_9_45901' => 'lsa', 'Lsat_1_v5_gn_9_46781' => 'lsa', 'Manes.01G162200' => 'mes', 'Manes.02G001200' => 'mes', 'Manes.03G156400' => 'mes', 'Manes.08G141800' => 'mes', 'Manes.08G142200' => 'mes', 'Manes.09G146600' => 'mes', 'Manes.12G039000' => 'mes', 'Manes.15G047400' => 'mes', 'Mapoly0060s0090' => 'mpo', 'Mapoly0063s0053' => 'mpo', 'Mapoly0077s0028' => 'mpo', 'Mapoly0077s0030' => 'mpo', 'Mapoly0077s0031' => 'mpo', 'Mapoly0077s0033' => 'mpo', 'Mapoly0081s0029' => 'mpo', 'Mapoly0081s0031' => 'mpo', 'Mapoly0081s0032' => 'mpo', 'Mapoly0081s0034' => 'mpo', 'MBI10_g26046_MAGBIO' => 'mbi', 'MBI10_g26059_MAGBIO' => 'mbi', 'MBI14_g31688_MAGBIO' => 'mbi', 'MCO01G021' => 'mco', 'MCO04G507' => 'mco', 'MCO11G401' => 'mco', 'MCO11G809' => 'mco', 'MD04G1233000' => 'mdo', 'MD04G1233500' => 'mdo', 'MD05G1186200' => 'mdo', 'MD11G1075400' => 'mdo', 'MD12G1250600' => 'mdo', 'MD12G1250900' => 'mdo', 'MD12G1251900' => 'mdo', 'MD13G1225400' => 'mdo', 'MD16G1230500' => 'mdo', 'Medtr1g045550' => 'mtr', 'Medtr1g079760' => 'mtr', 'Medtr1g079763' => 'mtr', 'Medtr1g079767' => 'mtr', 'Medtr3g463730' => 'mtr', 'Medtr7g098930' => 'mtr', 'Medtr7g113340' => 'mtr', 'MELO3C006363.2' => 'cme', 'MELO3C008657.2' => 'cme', 'MELO3C008659.2' => 'cme', 'MELO3C010086.2' => 'cme', 'MELO3C012832.2' => 'cme', 'MELO3C018350.2' => 'cme', 'MELO3C023074.2' => 'cme', 'MELO3C026663.2' => 'cme', 'Migut.D01734' => 'egut', 'Migut.F01815' => 'egut', 'Migut.F02051' => 'egut', 'Migut.F02052' => 'egut', 'Migut.F02053' => 'egut', 'Migut.F02054' => 'egut', 'Migut.G00590' => 'egut', 'Migut.N00321' => 'egut', 'MSTRG.21930' => 'ama', 'MSTRG.27431' => 'ama', 'MSTRG.4190' => 'ama', 'MSTRG.8173' => 'ama', 'MSTRG.9218' => 'ama', 'MSTRG.9613' => 'ama', 'Nitab4.5_0000385g0070' => 'nta', 'Nitab4.5_0000385g0090' => 'nta', 'Nitab4.5_0000392g0090' => 'nta', 'Nitab4.5_0000841g0070' => 'nta', 'Nitab4.5_0000841g0080' => 'nta', 'Nitab4.5_0000841g0110' => 'nta', 'Nitab4.5_0002600g0010' => 'nta', 'Nitab4.5_0002937g0040' => 'nta', 'Nitab4.5_0003148g0010' => 'nta', 'Nitab4.5_0003148g0030' => 'nta', 'Nitab4.5_0003474g0010' => 'nta', 'Nitab4.5_0005734g0020' => 'nta', 'Nitab4.5_0008594g0010' => 'nta', 'Nn1g01102' => 'nnu', 'Nn1g02260' => 'nnu', 'Nn1g03021' => 'nnu', 'Nn1g03024' => 'nnu', 'Nn1g03034' => 'nnu', 'Nn2g13691' => 'nnu', 'Nn3g17096' => 'nnu', 'Nn3g19825' => 'nnu', 'Nn4g24407' => 'nnu', 'Nn5g28234' => 'nnu', 'Nn5g28860' => 'nnu', 'Nn5g28861' => 'nnu', 'Nn6g33569' => 'nnu', 'Nn7g37883' => 'nnu', 'Oeu001248.1' => 'oeu', 'Oeu008814.1' => 'oeu', 'Oeu012937.1' => 'oeu', 'Oeu052474.1' => 'oeu', 'Oeu055043.1' => 'oeu', 'Oeu055044.1' => 'oeu', 'Os02g0620500' => 'osa', 'Os02g0620600' => 'osa', 'Os02g0815400' => 'osa', 'Os02g0815800' => 'osa', 'Os04g0509600' => 'osa', 'Peaxi162Scf00043g00216' => 'pax', 'Peaxi162Scf00077g00125' => 'pax', 'Peaxi162Scf00077g00138' => 'pax', 'Peaxi162Scf00077g00146' => 'pax', 'Peaxi162Scf00125g00122' => 'pax', 'Peaxi162Scf00789g00533' => 'pax', 'PGR004G0632' => 'pgr', 'PGR004G1412' => 'pgr', 'PGR004G2644' => 'pgr', 'PGR044G0414' => 'pgr', 'PGR119G0819' => 'pgr', 'PGR142G0025' => 'pgr', 'PGR142G2101' => 'pgr', 'PGSC0003DMG400001508' => 'stu', 'PGSC0003DMG400018761' => 'stu', 'PGSC0003DMG400028708' => 'stu', 'PGSC0003DMG400028710' => 'stu', 'PGSC0003DMG401028709' => 'stu', 'PGSC0003DMG402028709' => 'stu', 'Phvul.001G166900' => 'pvu', 'Phvul.006G067500' => 'pvu', 'Phvul.007G231700' => 'pvu', 'Phvul.L001832' => 'pvu', 'Phvul.L002032' => 'pvu', 'Phvul.L002132' => 'pvu', 'Potri.002G255000' => 'ptr', 'Potri.002G255100' => 'ptr', 'Potri.008G173800' => 'ptr', 'Potri.009G045200' => 'ptr', 'Potri.010G063500' => 'ptr', 'Potri.013G049925' => 'ptr', 'Potri.013G050300' => 'ptr', 'Potri.013G050400' => 'ptr', 'Potri.019G023600' => 'ptr', 'Potri.019G023700' => 'ptr', 'Pp3c18_1300' => 'ppa', 'Pp3c18_18430' => 'ppa', 'Pp3c18_18460' => 'ppa', 'Pp3c18_22220' => 'ppa', 'Pp3c21_10000' => 'ppa', 'Pp3c21_10030' => 'ppa', 'Pp3c22_21010' => 'ppa', 'Pp3s397_10' => 'ppa', 'Pp3s397_40' => 'ppa', 'PRCOL_00000478' => 'pco', 'PRCOL_00002741' => 'pco', 'PRCOL_00002874' => 'pco', 'PRCOL_00003043' => 'pco', 'PRCOL_00004095' => 'pco', 'PRCOL_00006307' => 'pco', 'Prupe.1G052400' => 'ppe', 'Prupe.1G573000' => 'ppe', 'Prupe.6G058300' => 'ppe', 'Prupe.6G352700' => 'ppe', 'Prupe.6G353000' => 'ppe', 'Prupe.6G353100' => 'ppe', 'Prupe.8G213000' => 'ppe', 'Psat0s1495g0040' => 'psa', 'Psat1g024160' => 'psa', 'Psat3g052320' => 'psa', 'Psat5g158680' => 'psa', 'Psat6g127280' => 'psa', 'Psat6g142000' => 'psa', 'Psat7g095160' => 'psa', 'PSO017G3867' => 'pso', 'PSO170G5604' => 'pso', 'PSO170G5974' => 'pso', 'PSO210G3904' => 'pso', 'PSO339G6147' => 'pso', 'PSO384G3994' => 'pso', 'PSO541G1691' => 'pso', 'PSO674G0050' => 'pso', 'PSO832G2551' => 'pso', 'QL01p038055' => 'qlo', 'QL01p042023' => 'qlo', 'QL01p042037' => 'qlo', 'QL01p042200' => 'qlo', 'QL01p042217' => 'qlo', 'QL03p018181' => 'qlo', 'QL03p032337' => 'qlo', 'QL03p032393' => 'qlo', 'QL03p032485' => 'qlo', 'QL06p021954' => 'qlo', 'QL09p042425' => 'qlo', 'RcHm_v2.0_Chr3g0449081' => 'rch', 'RcHm_v2.0_Chr3g0449091' => 'rch', 'RcHm_v2.0_Chr3g0449181' => 'rch', 'RcHm_v2.0_Chr4g0396081' => 'rch', 'RcHm_v2.0_Chr5g0069161' => 'rch', 'RcHm_v2.0_Chr5g0073421' => 'rch', 'RcHm_v2.0_Chr5g0073441' => 'rch', 'RcHm_v2.0_Chr6g0286021' => 'rch', 'Rhsim01G0236300' => 'rsi', 'Rhsim05G0088700' => 'rsi', 'Rhsim05G0170400' => 'rsi', 'Rhsim09G0043300' => 'rsi', 'Rhsim09G0043400' => 'rsi', 'Rhsim09G0132500' => 'rsi', 'Sabra02G0193900' => 'sbr', 'Sabra09G0032500' => 'sbr', 'Sabra10G0043400' => 'sbr', 'Sabra13G0045900' => 'sbr', 'Sabra13G0046100' => 'sbr', 'Sabra19G0033600' => 'sbr', 'Sabra19G0033700' => 'sbr', 'SalBow1G0848' => 'sbo', 'SalBow1G1524' => 'sbo', 'SalBow1G3250' => 'sbo', 'SalBow1G5540' => 'sbo', 'SalBow1G5753' => 'sbo', 'SalBow1G5981' => 'sbo', 'SalBow1G6873' => 'sbo', 'SalBow1G6941' => 'sbo', 'SalBow1G7793' => 'sbo', 'SalBow1G8050' => 'sbo', 'SalBow1G8168' => 'sbo', 'SalBow2G1081' => 'sbo', 'SalBow3G0409' => 'sbo', 'SalBow3G1253' => 'sbo', 'SalBow7G0001' => 'sbo', 'SalBow7G0455' => 'sbo', 'SalBow7G4397' => 'sbo', 'Sc06g0005310' => 'sci', 'Sc08g0004580' => 'sci', 'Sc13g0003040' => 'sci', 'Sc21g0006300' => 'sci', 'Sc24g0002520' => 'sci', 'Sed0006994' => 'sed', 'Sed0007863' => 'sed', 'Sed0008093' => 'sed', 'Sed0010027' => 'sed', 'Sed0010748' => 'sed', 'Sed0013634' => 'sed', 'Sed0019797' => 'sed', 'SEGI_04352' => 'sgi', 'SEGI_05244' => 'sgi', 'SEGI_21696' => 'sgi', 'SEGI_26471' => 'sgi', 'SEGI_28801' => 'sgi', 'SEGI_30710' => 'sgi', 'SEGI_35156' => 'sgi', 'SGA_v2.0_scaffold114G31922' => 'sas', 'SGA_v2.0_scaffold62G21470' => 'sas', 'SGA_v2.0_scaffold71G24046' => 'sas', 'SGA_v2.0_scaffold86G26857' => 'sas', 'SMO172G0144' => 'smo', 'SMO172G0199' => 'smo', 'SMO367G0938' => 'smo', 'Solyc03g045070.1' => 'sly', 'Solyc04g050470.4' => 'sly', 'Solyc04g050480.4' => 'sly', 'Solyc09g090730.2' => 'sly', 'Sopen03g009530' => 'spe', 'Sopen04g021230' => 'spe', 'Sopen04g021250' => 'spe', 'Sopen04g021260' => 'spe', 'Sopen09g033670' => 'spe', 'Sp3g22060' => 'spa', 'Sp3g22070' => 'spa', 'Sp5g21080' => 'spa', 'Sp7g05110' => 'spa', 'Sp7g11100' => 'spa', 'Sp7g26670' => 'spa', 'TAR362G0745' => 'tar', 'TAR365G0856' => 'tar', 'TAR365G0867' => 'tar', 'TAR369G0392' => 'tar', 'TAR623G1454' => 'tar', 'TAR633G0111' => 'tar', 'TAR633G1129' => 'tar', 'THA.LOC104804531' => 'tha', 'THA.LOC104804571' => 'tha', 'THA.LOC104821566' => 'tha', 'THA.LOC104821579' => 'tha', 'Thecc.01G247400' => 'tca', 'Thecc.04G268800' => 'tca', 'Thecc.05G266200' => 'tca', 'Thecc.05G266300' => 'tca', 'Thecc.05G266400' => 'tca', 'Thecc.05G266500' => 'tca', 'Thecc.07G153800' => 'tca', 'Thecc.09G302600' => 'tca', 'Thhalv10002494m.g' => 'esa', 'Thhalv10002502m.g' => 'esa', 'Thhalv10019185m.g' => 'esa', 'Thhalv10024961m.g' => 'esa', 'Thhalv10024967m.g' => 'esa', 'Thhalv10027857m.g' => 'esa', 'TPR.G10273' => 'tpr', 'TPR.G10274' => 'tpr', 'TPR.G10275' => 'tpr', 'TPR.G20065' => 'tpr', 'TPR.G21166' => 'tpr', 'TPR.G23956' => 'tpr', 'TPR.G33175' => 'tpr', 'TWI12G0758' => 'twi', 'TWI18G1096' => 'twi', 'TWI34G1716' => 'twi', 'TWI60G0996' => 'twi', 'TWI60G1676' => 'twi', 'TWI73G0554' => 'twi', 'TWI75G1889' => 'twi', 'unitig_32.g11689' => 'ugi', 'unitig_37.g12284' => 'ugi', 'unitig_46.g18577' => 'ugi', 'unitig_744.g24506' => 'ugi', 'unitig_748.g7338' => 'ugi', 'unitig_748.g8290' => 'ugi', 'unitig_899.g14421' => 'ugi', 'vmacro00536' => 'vma', 'vmacro10384' => 'vma', 'vmacro19977' => 'vma', 'vmacro19978' => 'vma', 'VMungo0540G1133' => 'vmu', 'VMungo0540G2142' => 'vmu', 'VMungo0720G1285' => 'vmu', 'VMungo0720G1920' => 'vmu', 'VMungo0720G2080' => 'vmu', 'VMungo0720G3181' => 'vmu', 'VMungo1309G2309' => 'vmu', 'VMungo1383G0420' => 'vmu', 'Zm00001eb077350' => 'zma', 'Zm00001eb247430' => 'zma', 'Zm00001eb258750' => 'zma', 'Zm00001eb258800' => 'zma' ) $gf_id = 'HOM05D000780' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000780' ) $data_identifier = 'HOM05D000780' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 8, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 21, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 9, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 4, 'din' => (int) 11, 'dzi' => (int) 5, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 6, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 17, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb258800' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1